Pairwise fitting pdb-1k4r on pdb-2y83 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-2y83 by gmfit(PID:1272346).





RANK[1] Corr.Coeff:0.595

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-2y83)

display:



color:


b'ACTIN FILAMENT POINTED END                                            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.595
0.549
0.532
0.479
0.440
0.427
0.360
0.357
0.336
0.287







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2y83"(PDB-format) or 
 "2y83"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.729059,-0.468928,0.498578 124.104083 center 0,0,0 model #1
move -9.601335,283.253581,92.922941 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!