Pairwise fitting pdb-1k4r on emdb-6423 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-6423 by gmfit(PID:4185857).





RANK[1] Corr.Coeff:0.097

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-6423)

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The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.097
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6423.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.414773,-0.804236,-0.425637 130.946687 center 0,0,0 model #1
move -5.862946,3.525327,11.499354 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6423)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4185857)]