Pairwise fitting pdb-1k4r on emdb-5520 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-5520 by gmfit(PID:4189981).





RANK[1] Corr.Coeff:0.114

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-5520)

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CryoEM structure of Dengue virus, full map [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.114
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5520.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.375835,-0.752289,0.541119 167.869360 center 0,0,0 model #1
move -15.987812,29.307809,13.859808 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5520)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4189981)]