Pairwise fitting pdb-1k4r on emdb-5132 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-5132 by gmfit(PID:541046).





RANK[1] Corr.Coeff:0.484

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-5132)

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The reconstructed F120 amyloid fibril represents the structure of a selected subpopulation from the Abeta(1-40) fibril sample with a mean crossover distance of 120 nm. The F140 subpopulation with a mean crossover distance of 140 nm had been studied and deposited previously (EMDB accession no. 5008). [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.484
0.470
0.439
0.404
0.354
0.329
0.325
0.318
0.277
0.238







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5132.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.012337,-0.675158,0.737570 174.004718 center 0,0,0 model #1
move 139.700203,270.578590,-27.818968 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!