Pairwise fitting pdb-1k4r on emdb-2998 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-2998 by gmfit(PID:378949).





RANK[1] Corr.Coeff:0.059

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-2998)

display:



color:


Cryo-EM structure of the unexpanded particles of Dengue virus serotype 2 strain New Guinea-C in complex with human antibody 2D22 Fab at 37 degrees C. The Fab molecules were added to the virus that had been pre-incubated at 37 degrees C. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.059
0.059
0.059
0.059
0.059
0.059
0.059
0.059
0.059
0.059







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2998.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.050849,-0.817431,-0.573777 173.748243 center 0,0,0 model #1
move 57.344683,-198.592849,103.740531 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!