Pairwise fitting pdb-1k4r on emdb-2736 by gmfit



Pairwise fitting of target pdb-1k4r on reference emdb-2736 by gmfit(PID:4059073).

RANK[1] Corr.Coeff:0.548 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(emdb-2736)
display:
color:
Conformational Snapshots of Inducible Nitric Oxide Synthase (iNOS) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.548 0.514 0.511 0.494 0.468 0.462 0.431 0.421 0.384 0.314

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2736.map.gz", and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.004606,-0.223538,0.974684 121.685041 center 0,0,0 model #1
    move 8.246877,14.717683,-198.614912 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2736)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4059073)]