Pairwise fitting pdb-1k4r on emdb-2466 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-2466 by gmfit(PID:133704).





RANK[1] Corr.Coeff:0.514

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-2466)

display:



color:


30S Ribosome Subunit Assembly Intermediates, Intermediate Group 2c [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.514
0.468
0.453
0.426
0.425
0.400
0.381
0.371
0.336
0.290







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2466.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.191006,-0.595146,-0.780588 10.852543 center 0,0,0 model #1
move 1.199883,11.621488,-224.215445 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!