Pairwise fitting emdb-5372 on pdb-5lk7 by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-5lk7 by gmfit(PID:331988).





RANK[1] Corr.Coeff:0.102

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-5lk7)

display:



color:


b'SINGLE PARTICLE RECONSTRUCTION OF SLOW BEE PARALYSIS VIRUS VIRION AT  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.102
0.030
0.029
0.028
0.026
0.021
0.019
0.012
0.012
0.006







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5lk7"(PDB-format) or 
 "5lk7"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.150154,0.943622,-0.295011 135.613990 center 0,0,0 model #1
move -138.042777,91.729520,53.119560 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!