Pairwise fitting emdb-5372 on pdb-5ac9 by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-5ac9 by gmfit(PID:4108481).





RANK[1] Corr.Coeff:0.089

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-5ac9)

display:



color:


b'STRUCTURE-BASED ENERGETICS OF PROTEIN INTERFACES GUIDE FOOT-AND-MOUTH ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.089
0.078
0.070
0.059
0.042
0.040
0.036
0.025
0.004
0.001







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5ac9"(PDB-format) or 
 "5ac9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.097970,-0.827819,-0.552374 129.565543 center 0,0,0 model #1
move 24.787418,101.392098,133.768444 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5ac9)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(4108481)]