Pairwise fitting emdb-5372 on pdb-4biq by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-4biq by gmfit(PID:4088151).





RANK[1] Corr.Coeff:0.078

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

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Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-4biq)

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color:


b'HOMOLOGY MODEL OF COXSACKIEVIRUS A7 (CAV7) EMPTY CAPSID PROTEINS.     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.078
0.012
0.010
0.009
0.008
0.007
0.004
0.003
0.002
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4biq"(PDB-format) or 
 "4biq"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.648111,0.179314,-0.740134 69.298398 center 0,0,0 model #1
move 70.460429,-59.608455,121.160841 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4biq)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(4088151)]