Pairwise fitting emdb-5372 on pdb-3zx8 by gmfit



Pairwise fitting of target emdb-5372 on reference pdb-3zx8 by gmfit(PID:4112735).

RANK[1] Corr.Coeff:0.105 [JSmol] [Molmil]
TARGET(emdb-5372)
display:
color:
Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5372)]
REFERENCE(pdb-3zx8)
display:
color:
b'CRYO-EM RECONSTRUCTION OF NATIVE AND EXPANDED TURNIP CRINKLE VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.105 0.071 0.064 0.059 0.043 0.042 0.036 0.016 0.007 0.001

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3zx8"(PDB-format) or "3zx8"(mmCIF-format), and read it.
  2. Download the Target map "emd_5372.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.227780,0.888833,-0.397607 82.295501 center 0,0,0 model #1
    move 92.841568,75.800806,147.037247 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3zx8)] [Download the target GMM(emdb 5372)] [Download gmfit result file(4112735)]