Pairwise fitting emdb-5372 on pdb-3zx8 by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3zx8 by gmfit(PID:4112735).





RANK[1] Corr.Coeff:0.105

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3zx8)

display:



color:


b'CRYO-EM RECONSTRUCTION OF NATIVE AND EXPANDED TURNIP CRINKLE VIRUS    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.105
0.071
0.064
0.059
0.043
0.042
0.036
0.016
0.007
0.001







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3zx8"(PDB-format) or 
 "3zx8"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.227780,0.888833,-0.397607 82.295501 center 0,0,0 model #1
move 92.841568,75.800806,147.037247 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3zx8)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(4112735)]