Pairwise fitting emdb-5372 on pdb-3jbg by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3jbg by gmfit(PID:16671).





RANK[1] Corr.Coeff:0.121

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

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Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3jbg)

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b'COMPLEX OF POLIOVIRUS WITH VHH PVSS21E                                ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.121
0.092
0.077
0.067
0.066
0.066
0.062
0.047
0.042
0.040







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jbg"(PDB-format) or 
 "3jbg"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.396309,0.659978,-0.638254 152.274542 center 0,0,0 model #1
move 101.921361,-10.198625,50.869837 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3jbg)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(16671)]