Pairwise fitting emdb-5372 on pdb-1xyr by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-1xyr by gmfit(PID:4090040).





RANK[1] Corr.Coeff:0.094

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

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Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-1xyr)

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color:


b'POLIOVIRUS 135S CELL ENTRY INTERMEDIATE                               ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.094
0.013
0.012
0.012
0.010
0.009
0.007
0.005
0.004
0.004







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1xyr"(PDB-format) or 
 "1xyr"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.766686,0.293125,-0.571201 74.180513 center 0,0,0 model #1
move 75.466987,-59.556967,120.714134 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1xyr)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(4090040)]