Pairwise fitting emdb-5372 on pdb-1m11 by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-1m11 by gmfit(PID:4100714).





RANK[1] Corr.Coeff:0.102

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-1m11)

display:



color:


b'STRUCTURAL MODEL OF HUMAN DECAY-ACCELERATING FACTOR BOUND TO ECHOVIRUS' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.102
0.010
0.009
0.005
0.005
0.005
0.004
0.004
0.003
0.003







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1m11"(PDB-format) or 
 "1m11"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.465746,-0.544619,-0.697474 164.741110 center 0,0,0 model #1
move 57.085713,96.446059,68.341115 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1m11)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(4100714)]