Pairwise fitting emdb-5372 on pdb-1d3e by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-1d3e by gmfit(PID:4111103).





RANK[1] Corr.Coeff:0.116

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

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Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-1d3e)

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color:


b'CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.116
0.114
0.112
0.111
0.105
0.103
0.093
0.089
0.088
0.084







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1d3e"(PDB-format) or 
 "1d3e"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.739778,-0.660377,0.128963 149.421164 center 0,0,0 model #1
move 26.313211,17.352321,22.737985 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1d3e)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(4111103)]