Pairwise fitting emdb-5372 on pdb-1d3e by gmfit



Pairwise fitting of target emdb-5372 on reference pdb-1d3e by gmfit(PID:4116401).

RANK[1] Corr.Coeff:0.116 [JSmol] [Molmil]
TARGET(emdb-5372)
display:
color:
Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5372)]
REFERENCE(pdb-1d3e)
display:
color:
b'CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.116 0.114 0.112 0.111 0.105 0.103 0.093 0.089 0.088 0.084

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1d3e"(PDB-format) or "1d3e"(mmCIF-format), and read it.
  2. Download the Target map "emd_5372.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.739778,-0.660377,0.128963 149.421164 center 0,0,0 model #1
    move 26.313211,17.352321,22.737985 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1d3e)] [Download the target GMM(emdb 5372)] [Download gmfit result file(4116401)]