Pairwise fitting emdb-5168 on pdb-1x1l by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-1x1l by gmfit(PID:506465).





RANK[1] Corr.Coeff:0.399

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

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Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-1x1l)

display:



color:


b"INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE   " [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.399
0.378
0.373
0.321
0.317
0.313
0.312
0.277
0.251
0.194







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1x1l"(PDB-format) or 
 "1x1l"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.187954,-0.401096,0.896546 129.593420 center 0,0,0 model #1
move -39.486296,35.018941,32.843055 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!