Pairwise fitting emdb-5168 on pdb-1k4r by gmfit



Pairwise fitting of target emdb-5168 on reference pdb-1k4r by gmfit(PID:4091873).

RANK[1] Corr.Coeff:0.497 [JSmol] [Molmil]
TARGET(emdb-5168)
display:
color:
Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5168)]
REFERENCE(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.497 0.459 0.428 0.422 0.381 0.376 0.357 0.357 0.282 0.272

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  2. Download the Target map "emd_5168.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.660135,0.240202,0.711705 169.623682 center 0,0,0 model #1
    move 27.526014,-26.747890,228.624733 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1k4r)] [Download the target GMM(emdb 5168)] [Download gmfit result file(4091873)]