Pairwise fitting emdb-5168 on pdb-1k4r by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-1k4r by gmfit(PID:4091873).





RANK[1] Corr.Coeff:0.497

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-1k4r)

display:



color:


b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.497
0.459
0.428
0.422
0.381
0.376
0.357
0.357
0.282
0.272







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1k4r"(PDB-format) or 
 "1k4r"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.660135,0.240202,0.711705 169.623682 center 0,0,0 model #1
move 27.526014,-26.747890,228.624733 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1k4r)]

[Download the target GMM(emdb 5168)]

[Download gmfit result file(4091873)]