Pairwise fitting emdb-5111 on pdb-3j2j by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-3j2j by gmfit(PID:1284223).





RANK[1] Corr.Coeff:0.084

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-3j2j)

display:



color:


b'EMPTY COXSACKIEVIRUS A9 CAPSID                                        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.084
0.002
0.001
0.001
0.001
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2j"(PDB-format) or 
 "3j2j"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.797420,-0.586752,0.140865 161.710317 center 0,0,0 model #1
move 90.749136,-33.673317,114.734008 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!