Pairwise fitting emdb-5034 on pdb-5fkx by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5fkx by gmfit(PID:4187987).





RANK[1] Corr.Coeff:0.088

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5fkx)

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color:


b'STRUCTURE OF E.COLI INDUCIBLE LYSINE DECARBOXYLASE AT ACTIVE PH       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.088
0.080
0.075
0.074
0.061
0.058
0.058
0.055
0.051
0.050







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5fkx"(PDB-format) or 
 "5fkx"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.238347,0.937836,0.252299 134.358487 center 0,0,0 model #1
move -42.378987,-227.619080,117.405814 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5fkx)]

[Download the target GMM(emdb 5034)]

[Download gmfit result file(4187987)]