Pairwise fitting emdb-5034 on pdb-4ui9 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-4ui9 by gmfit(PID:261766).





RANK[1] Corr.Coeff:0.430

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-4ui9)

display:



color:


b'ATOMIC STRUCTURE OF THE HUMAN ANAPHASE-PROMOTING COMPLEX              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.430
0.414
0.402
0.394
0.389
0.384
0.380
0.378
0.308
0.294







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4ui9"(PDB-format) or 
 "4ui9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.123380,-0.638263,0.759867 147.721845 center 0,0,0 model #1
move 449.286546,333.711617,190.831643 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!