Pairwise fitting emdb-5034 on pdb-3zbi by gmfit



Pairwise fitting of target emdb-5034 on reference pdb-3zbi by gmfit(PID:4093692).

RANK[1] Corr.Coeff:0.660 [JSmol] [Molmil]
TARGET(emdb-5034)
display:
color:
Structure of a type IV secretion system core complex [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5034)]
REFERENCE(pdb-3zbi)
display:
color:
b'FITTING RESULT IN THE O-LAYER OF THE SUBNANOMETER STRUCTURE OF THE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.660 0.658 0.647 0.565 0.559 0.532 0.528 0.526 0.251 0.248

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3zbi"(PDB-format) or "3zbi"(mmCIF-format), and read it.
  2. Download the Target map "emd_5034.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.008453,0.002729,0.999961 132.275137 center 0,0,0 model #1
    move 251.476934,-15.199324,-194.566238 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3zbi)] [Download the target GMM(emdb 5034)] [Download gmfit result file(4093692)]