Pairwise fitting emdb-5034 on pdb-3jat by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3jat by gmfit(PID:4111331).





RANK[1] Corr.Coeff:0.498

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3jat)

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b'CRYO-EM STRUCTURE OF GMPCPP-MICROTUBULE (14 PROTOFILAMENTS) DECORATED ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.498
0.476
0.473
0.465
0.455
0.452
0.432
0.430
0.217
0.215







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jat"(PDB-format) or 
 "3jat"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.312475,0.685185,-0.657936 146.866733 center 0,0,0 model #1
move 326.028965,619.457003,558.913627 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3jat)]

[Download the target GMM(emdb 5034)]

[Download gmfit result file(4111331)]