Pairwise fitting emdb-5034 on pdb-3jat by gmfit



Pairwise fitting of target emdb-5034 on reference pdb-3jat by gmfit(PID:4111331).

RANK[1] Corr.Coeff:0.498 [JSmol] [Molmil]
TARGET(emdb-5034)
display:
color:
Structure of a type IV secretion system core complex [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5034)]
REFERENCE(pdb-3jat)
display:
color:
b'CRYO-EM STRUCTURE OF GMPCPP-MICROTUBULE (14 PROTOFILAMENTS) DECORATED ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.498 0.476 0.473 0.465 0.455 0.452 0.432 0.430 0.217 0.215

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3jat"(PDB-format) or "3jat"(mmCIF-format), and read it.
  2. Download the Target map "emd_5034.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.312475,0.685185,-0.657936 146.866733 center 0,0,0 model #1
    move 326.028965,619.457003,558.913627 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3jat)] [Download the target GMM(emdb 5034)] [Download gmfit result file(4111331)]