Pairwise fitting emdb-5034 on pdb-3j9x by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3j9x by gmfit(PID:577703).





RANK[1] Corr.Coeff:0.542

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3j9x)

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b'A VIRUS THAT INFECTS A HYPERTHERMOPHILE ENCAPSIDATES A-FORM DNA       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.542
0.524
0.522
0.518
0.517
0.512
0.511
0.511
0.284
0.282







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9x"(PDB-format) or 
 "3j9x"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.185219,-0.146919,-0.971653 164.740239 center 0,0,0 model #1
move 47.865231,136.227776,-277.947459 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!