Pairwise fitting emdb-5034 on pdb-3j0f by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3j0f by gmfit(PID:487802).





RANK[1] Corr.Coeff:0.402

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3j0f)

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b'SINDBIS VIRION                                                        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.402
0.334
0.325
0.321
0.317
0.302
0.296
0.288
0.285
0.263







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j0f"(PDB-format) or 
 "3j0f"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.894071,-0.203189,-0.399189 107.750042 center 0,0,0 model #1
move 20.046084,352.996388,149.353478 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!