Pairwise fitting emdb-5034 on pdb-3j0c by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3j0c by gmfit(PID:249003).





RANK[1] Corr.Coeff:0.407

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3j0c)

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b'MODELS OF E1, E2 AND CP OF VENEZUELAN EQUINE ENCEPHALITIS VIRUS TC-83 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.407
0.396
0.347
0.330
0.329
0.323
0.316
0.302
0.289
0.276







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j0c"(PDB-format) or 
 "3j0c"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.590164,-0.003140,0.807277 144.172650 center 0,0,0 model #1
move 301.213574,86.857163,-94.764604 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!