Pairwise fitting emdb-5034 on pdb-3izx by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3izx by gmfit(PID:439783).





RANK[1] Corr.Coeff:0.387

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3izx)

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b'3.1 ANGSTROM CRYOEM STRUCTURE OF CYTOPLASMIC POLYHEDROSIS VIRUS       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.387
0.347
0.329
0.325
0.285
0.283
0.278
0.271
0.263
0.244







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3izx"(PDB-format) or 
 "3izx"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.904981,-0.217494,-0.365659 175.309529 center 0,0,0 model #1
move 5.786353,256.606559,-59.885693 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!