Pairwise fitting emdb-5034 on pdb-3iz4 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3iz4 by gmfit(PID:1264536).





RANK[1] Corr.Coeff:0.305

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3iz4)

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color:


b'MODIFIED E. COLI TMRNA IN THE RESUME STATE WITH THE TRNA-LIKE DOMAIN  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.305
0.253
0.251
0.239
0.238
0.237
0.235
0.231
0.173
0.144







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iz4"(PDB-format) or 
 "3iz4"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.637397,-0.547802,0.541884 29.547403 center 0,0,0 model #1
move -157.198538,-130.743912,-282.944589 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!