Pairwise fitting emdb-5034 on pdb-2om3 by gmfit



Pairwise fitting of target emdb-5034 on reference pdb-2om3 by gmfit(PID:4112471).

RANK[1] Corr.Coeff:0.099 [JSmol] [Molmil]
TARGET(emdb-5034)
display:
color:
Structure of a type IV secretion system core complex [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5034)]
REFERENCE(pdb-2om3)
display:
color:
b'HIGH-RESOLUTION CRYO-EM STRUCTURE OF TOBACCO MOSAIC VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.099 0.021 0.020 0.018 0.016 0.016 0.015 0.015 0.015 0.015

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2om3"(PDB-format) or "2om3"(mmCIF-format), and read it.
  2. Download the Target map "emd_5034.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.168155,-0.956909,-0.236748 124.793855 center 0,0,0 model #1
    move 311.833112,-92.483575,-134.814459 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2om3)] [Download the target GMM(emdb 5034)] [Download gmfit result file(4112471)]