Pairwise fitting emdb-5034 on pdb-2om3 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-2om3 by gmfit(PID:4158975).





RANK[1] Corr.Coeff:0.099

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-2om3)

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color:


b'HIGH-RESOLUTION CRYO-EM STRUCTURE OF TOBACCO MOSAIC VIRUS             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.099
0.021
0.020
0.018
0.016
0.016
0.015
0.015
0.015
0.015







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2om3"(PDB-format) or 
 "2om3"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.168155,-0.956909,-0.236748 124.793855 center 0,0,0 model #1
move 311.833112,-92.483575,-134.814459 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2om3)]

[Download the target GMM(emdb 5034)]

[Download gmfit result file(4158975)]