Pairwise fitting emdb-5034 on emdb-6259 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-6259 by gmfit(PID:4152229).





RANK[1] Corr.Coeff:0.498

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-6259)

display:



color:


ERE-DNA/ERalpha/SRC-3/p300 complex with antibody [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.498
0.483
0.479
0.479
0.415
0.403
0.403
0.403
0.395
0.323







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6259.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.895659,-0.313461,-0.315496 115.247894 center 0,0,0 model #1
move -276.208821,-141.101547,41.937595 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6259)]

[Download the target GMM(emdb 5034)]

[Download gmfit result file(4152229)]