Pairwise fitting emdb-5034 on emdb-5553 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-5553 by gmfit(PID:374748).





RANK[1] Corr.Coeff:0.512

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-5553)

display:



color:


Molecular structure of the native HIV-1 Env trimer bound to m36: Membrane region [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.512
0.508
0.507
0.500
0.477
0.474
0.473
0.473
0.228
0.226







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5553.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.016163,-0.015546,-0.999748 94.745216 center 0,0,0 model #1
move 47.131858,391.027177,-89.352572 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!