Pairwise fitting emdb-5034 on emdb-5121 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-5121 by gmfit(PID:545092).





RANK[1] Corr.Coeff:0.586

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-5121)

display:



color:


BK channel with membrane density restored [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.586
0.582
0.581
0.580
0.575
0.574
0.571
0.565
0.250
0.249







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5121.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.590510,-0.807030,0.000000 180.000000 center 0,0,0 model #1
move 8.058035,-98.500100,263.229755 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!