Pairwise fitting emdb-5034 on emdb-5021 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-5021 by gmfit(PID:4058333).





RANK[1] Corr.Coeff:0.433

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-5021)

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color:


Molecular Structure of the Native HIV-1 gp120 trimer bound to b12: Membrane region [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.433
0.429
0.378
0.343
0.319
0.317
0.317
0.311
0.221
0.212







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5021.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.569395,0.822063,-0.001186 180.000000 center 0,0,0 model #1
move 98.733740,-18.236892,255.907004 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5021)]

[Download the target GMM(emdb 5034)]

[Download gmfit result file(4058333)]