Pairwise fitting emdb-5034 on emdb-3433 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-3433 by gmfit(PID:4089490).





RANK[1] Corr.Coeff:0.405

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-3433)

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color:


Anaphase-promoting complex/Cyclosome (APC/C)-CDH1-UBE2S-Ubiquitin (variant)-substrate [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.405
0.390
0.374
0.369
0.367
0.365
0.364
0.350
0.250
0.244







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3433.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.224200,0.974247,-0.024017 98.145159 center 0,0,0 model #1
move 84.587500,55.502232,440.004786 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3433)]

[Download the target GMM(emdb 5034)]

[Download gmfit result file(4089490)]