Pairwise fitting emdb-5034 on emdb-2664 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-2664 by gmfit(PID:424135).





RANK[1] Corr.Coeff:0.378

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-2664)

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Structure of SMG1C-UPF1 complex, comprising SMG1 kinase, SMG8, SMG9 and UPF1 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.378
0.354
0.345
0.335
0.334
0.326
0.324
0.298
0.293
0.232







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2664.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.322739,0.572902,0.753408 179.646805 center 0,0,0 model #1
move 277.503544,-35.655605,-80.438295 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!