Pairwise fitting emdb-5034 on emdb-2198 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-2198 by gmfit(PID:4094017).





RANK[1] Corr.Coeff:0.393

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-2198)

display:



color:


Architecture of human translation initiation factor 3 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.393
0.383
0.354
0.330
0.330
0.324
0.322
0.313
0.236
0.219







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2198.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.276445,-0.140066,-0.950768 51.972800 center 0,0,0 model #1
move -209.854031,48.393829,-229.681320 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2198)]

[Download the target GMM(emdb 5034)]

[Download gmfit result file(4094017)]