Pairwise fitting emdb-5034 on emdb-2024 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-2024 by gmfit(PID:800255).





RANK[1] Corr.Coeff:0.487

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-2024)

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Three-dimensional reconstruction of another targeted individual 17nm nascent high-density lipoprotein (HDL) particle by individual-particle electron tomography (IPET). The reconstruction displayed a ring-shaped structure of containing three protein - apoipoprotein A-Is (28 kDa each). [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.487
0.468
0.464
0.448
0.447
0.442
0.436
0.435
0.226
0.219







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2024.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.975927,-0.149593,-0.158711 177.992091 center 0,0,0 model #1
move 127.361088,396.572442,385.703476 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!