Pairwise fitting emdb-5023 on pdb-4uqj by gmfit



Pairwise fitting of target emdb-5023 on reference pdb-4uqj by gmfit(PID:4115045).

RANK[1] Corr.Coeff:0.400 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(pdb-4uqj)
display:
color:
b'CRYO-EM DENSITY MAP OF GLUA2EM IN COMPLEX WITH ZK200775 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.400 0.382 0.379 0.377 0.371 0.370 0.368 0.366 0.241 0.241

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4uqj"(PDB-format) or "4uqj"(mmCIF-format), and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.797046,0.313993,-0.515874 102.028722 center 0,0,0 model #1
    move 55.248085,415.250814,458.402986 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4uqj)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4115045)]