Pairwise fitting emdb-5023 on pdb-4upb by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-4upb by gmfit(PID:4090878).





RANK[1] Corr.Coeff:0.406

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-4upb)

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color:


b'ELECTRON CRYO-MICROSCOPY OF THE COMPLEX FORMED BETWEEN THE HEXAMERIC  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.406
0.362
0.354
0.352
0.351
0.348
0.339
0.316
0.302
0.296







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4upb"(PDB-format) or 
 "4upb"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.190041,0.080532,0.978468 173.506909 center 0,0,0 model #1
move 166.883520,140.732272,22.402792 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4upb)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(4090878)]