Pairwise fitting emdb-5023 on pdb-4cc8 by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-4cc8 by gmfit(PID:366523).





RANK[1] Corr.Coeff:0.427

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-4cc8)

display:



color:


b'PRE-FUSION STRUCTURE OF TRIMERIC HIV-1 ENVELOPE GLYCOPROTEIN          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.427
0.427
0.426
0.395
0.392
0.392
0.389
0.388
0.256
0.254







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4cc8"(PDB-format) or 
 "4cc8"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.003846,-0.002678,0.999989 71.685724 center 0,0,0 model #1
move 269.317695,-120.332360,51.047379 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4cc8)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(366523)]