Pairwise fitting emdb-5023 on pdb-4a7l by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-4a7l by gmfit(PID:913453).





RANK[1] Corr.Coeff:0.528

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-4a7l)

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color:


b'STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR ATM 1)       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.528
0.503
0.500
0.496
0.443
0.442
0.441
0.441
0.422
0.410







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4a7l"(PDB-format) or 
 "4a7l"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.567107,0.309856,-0.763137 173.390901 center 0,0,0 model #1
move 211.188012,462.849520,134.180546 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4a7l)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(913453)]