Pairwise fitting emdb-5023 on pdb-4a7l by gmfit



Pairwise fitting of target emdb-5023 on reference pdb-4a7l by gmfit(PID:4060869).

RANK[1] Corr.Coeff:0.528 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(pdb-4a7l)
display:
color:
b'STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR ATM 1) ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.528 0.503 0.500 0.496 0.443 0.442 0.441 0.441 0.422 0.410

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4a7l"(PDB-format) or "4a7l"(mmCIF-format), and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.567107,0.309856,-0.763137 173.390901 center 0,0,0 model #1
    move 211.188012,462.849520,134.180546 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4a7l)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4060869)]