Pairwise fitting emdb-5023 on pdb-4a7f by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-4a7f by gmfit(PID:658481).





RANK[1] Corr.Coeff:0.513

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-4a7f)

display:



color:


b'STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR ATM 3)       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.513
0.507
0.498
0.489
0.453
0.451
0.449
0.447
0.433
0.418







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4a7f"(PDB-format) or 
 "4a7f"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.318776,0.942353,-0.101747 75.163329 center 0,0,0 model #1
move -47.735571,-6.182879,324.860645 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!