Pairwise fitting emdb-5023 on pdb-3j0c by gmfit



Pairwise fitting of target emdb-5023 on reference pdb-3j0c by gmfit(PID:4100176).

RANK[1] Corr.Coeff:0.376 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(pdb-3j0c)
display:
color:
b'MODELS OF E1, E2 AND CP OF VENEZUELAN EQUINE ENCEPHALITIS VIRUS TC-83 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.376 0.351 0.348 0.346 0.332 0.328 0.319 0.318 0.296 0.274

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j0c"(PDB-format) or "3j0c"(mmCIF-format), and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.308999,0.870774,-0.382454 115.778772 center 0,0,0 model #1
    move 13.696780,124.488731,55.377714 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j0c)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4100176)]