Pairwise fitting emdb-5023 on pdb-3j0c by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-3j0c by gmfit(PID:16484).





RANK[1] Corr.Coeff:0.376

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-3j0c)

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b'MODELS OF E1, E2 AND CP OF VENEZUELAN EQUINE ENCEPHALITIS VIRUS TC-83 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.376
0.351
0.348
0.346
0.332
0.328
0.319
0.318
0.296
0.274







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j0c"(PDB-format) or 
 "3j0c"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.308999,0.870774,-0.382454 115.778772 center 0,0,0 model #1
move 13.696780,124.488731,55.377714 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j0c)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(16484)]