Pairwise fitting emdb-5023 on pdb-2xyz by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-2xyz by gmfit(PID:4090366).





RANK[1] Corr.Coeff:0.543

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-2xyz)

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color:


b'DE NOVO MODEL OF BACTERIOPHAGE P22 VIRION COAT PROTEIN                ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.543
0.499
0.499
0.487
0.460
0.459
0.450
0.412
0.258
0.229







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xyz"(PDB-format) or 
 "2xyz"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.224982,0.225507,-0.947908 107.209414 center 0,0,0 model #1
move -156.288848,160.218782,309.272683 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2xyz)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(4090366)]