Pairwise fitting emdb-5023 on emdb-6501 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-6501 by gmfit(PID:1280568).





RANK[1] Corr.Coeff:0.512

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-6501)

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color:


Electron microscopy of dimeric ATM kinase [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.512
0.507
0.506
0.499
0.499
0.499
0.498
0.495
0.395
0.395







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6501.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.586138,0.642074,-0.494148 103.055778 center 0,0,0 model #1
move -129.854358,120.124029,238.151784 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!