Pairwise fitting emdb-5023 on emdb-6385 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-6385 by gmfit(PID:4062132).

RANK[1] Corr.Coeff:0.364 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-6385)
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Electron cryo-microscopy of AP-1:Arf1:Nef complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.364 0.354 0.353 0.350 0.341 0.328 0.323 0.310 0.251 0.235

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_6385.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.356174,0.828350,0.432407 30.224401 center 0,0,0 model #1
    move 2.984195,-92.133014,193.232112 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 6385)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4062132)]