Pairwise fitting emdb-5023 on emdb-6259 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-6259 by gmfit(PID:387012).





RANK[1] Corr.Coeff:0.520

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-6259)

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color:


ERE-DNA/ERalpha/SRC-3/p300 complex with antibody [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.520
0.515
0.513
0.491
0.488
0.486
0.475
0.473
0.469
0.443







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6259.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.374463,0.495161,-0.783960 143.069841 center 0,0,0 model #1
move -39.699531,187.279444,234.197908 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!