Pairwise fitting emdb-5023 on emdb-5261 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-5261 by gmfit(PID:548272).





RANK[1] Corr.Coeff:0.501

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-5261)

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Seeing the Portal in Herpes Simplex Virus type I B-capsids. [Ngauss:19]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.501
0.496
0.496
0.494
0.466
0.465
0.465
0.463
0.418
0.412







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5261.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.315062,0.941840,0.116934 166.186608 center 0,0,0 model #1
move 268.793382,-73.758276,-261.105453 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!