Pairwise fitting emdb-5023 on emdb-5163 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-5163 by gmfit(PID:4173829).





RANK[1] Corr.Coeff:0.495

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-5163)

display:



color:


PsV-S [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.495
0.483
0.459
0.458
0.451
0.447
0.442
0.397
0.271
0.237







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5163.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.378035,0.263690,-0.887444 86.478533 center 0,0,0 model #1
move -178.421379,182.480162,150.269935 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5163)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(4173829)]