Pairwise fitting emdb-5023 on emdb-4015 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-4015 by gmfit(PID:221750).





RANK[1] Corr.Coeff:0.684

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-4015)

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A 3.9 Angstrom structure of HIV-1 CA-SP1 assembled in presence of Bevirimat [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.684
0.682
0.676
0.658
0.622
0.621
0.610
0.608
0.305
0.304







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_4015.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.006504,0.017282,0.999829 15.075376 center 0,0,0 model #1
move -16.111291,-122.636834,40.175905 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!