Pairwise fitting emdb-1975 on pdb-5fj9 by gmfit



Pairwise fitting of target emdb-1975 on reference pdb-5fj9 by gmfit(PID:4112973).

RANK[1] Corr.Coeff:0.590 [JSmol] [Molmil]
TARGET(emdb-1975)
display:
color:
Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1975)]
REFERENCE(pdb-5fj9)
display:
color:
b'CRYO-EM STRUCTURE OF YEAST APO RNA POLYMERASE III AT 4.6 A ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.590 0.546 0.497 0.496 0.493 0.472 0.468 0.398 0.395 0.389

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5fj9"(PDB-format) or "5fj9"(mmCIF-format), and read it.
  2. Download the Target map "emd_1975.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.770058,-0.238106,-0.591875 144.520230 center 0,0,0 model #1
    move -186.478589,161.466798,52.990171 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5fj9)] [Download the target GMM(emdb 1975)] [Download gmfit result file(4112973)]