Pairwise fitting emdb-1975 on pdb-5fj9 by gmfit










Pairwise fitting of target emdb-1975 on reference pdb-5fj9 by gmfit(PID:4154885).





RANK[1] Corr.Coeff:0.590

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1975)

display:



color:



Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1975)]







REFERENCE(pdb-5fj9)

display:



color:


b'CRYO-EM STRUCTURE OF YEAST APO RNA POLYMERASE III AT 4.6 A            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.590
0.546
0.497
0.496
0.493
0.472
0.468
0.398
0.395
0.389







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5fj9"(PDB-format) or 
 "5fj9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1975.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.770058,-0.238106,-0.591875 144.520230 center 0,0,0 model #1
move -186.478589,161.466798,52.990171 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5fj9)]

[Download the target GMM(emdb 1975)]

[Download gmfit result file(4154885)]